Molecular identification of Betacoronavirus in bats from Sardinia (Italy): first detection and phylogeny
Identifieur interne : 000881 ( Main/Exploration ); précédent : 000880; suivant : 000882Molecular identification of Betacoronavirus in bats from Sardinia (Italy): first detection and phylogeny
Auteurs : Roberta Lecis [Italie] ; Mauro Mucedda [Italie] ; Ermanno Pidinchedda [Italie] ; Marco Pittau [Italie] ; Alberto Alberti [Italie]Source :
- Virus Genes [ 0920-8569 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Maladies de l'animal.
- Analyse de séquence d'ADN, Animaux, Génome viral, Humains, Italie, Phylogénie, Réaction de polymérisation en chaîne, Spécificité d'hôte, Évolution moléculaire.
- Wicri :
- geographic : Italie.
English descriptors
- KwdEn :
- Animal Diseases (virology), Animals, Betacoronavirus (classification), Betacoronavirus (genetics), Betacoronavirus (physiology), Chiroptera (virology), Coronavirus Infections (veterinary), Evolution, Molecular, Genome, Viral, Host Specificity, Humans, Italy, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA.
- MESH :
- geographic : Italy.
- classification : Betacoronavirus.
- genetics : Betacoronavirus.
- physiology : Betacoronavirus.
- veterinary : Coronavirus Infections.
- virology : Animal Diseases, Chiroptera.
- Animals, Evolution, Molecular, Genome, Viral, Host Specificity, Humans, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA.
Abstract
Bats may be natural reservoirs for a large variety of emerging viruses, including mammalian coronaviruses (CoV). The recent emergence of severe acute respiratory syndrome-associated coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) in humans, with evidence that these viruses may have their ancestry in bats, highlights the importance of virus surveillance in bat populations. Here, we report the identification and molecular characterization of a bat β-Coronavirus, detected during a viral survey carried out on different bat species in the island of Sardinia (Italy). Cutaneous, oral swabs, and faecal samples were collected from 46 bats, belonging to 15 different species, and tested for viral presence. Coronavirus RNA was detected in faecal samples from three different species: the greater horseshoe bat (
Url:
DOI: 10.1007/s11262-018-1614-8
PubMed: 30426315
PubMed Central: 7089328
Affiliations:
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Vienna 2, 07100 Sassari</wicri:regionArea><wicri:noRegion>07100 Sassari</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 2097 9138</institution-id><institution-id institution-id-type="GRID">grid.11450.31</institution-id><institution>Mediterranean Centre for Disease Control,</institution><institution>University of Sassari,</institution></institution-wrap>Via Vienna 2, 07100 Sassari, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Via Vienna 2, 07100 Sassari</wicri:regionArea><wicri:noRegion>07100 Sassari</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus Genes</title><idno type="ISSN">0920-8569</idno><idno type="eISSN">1572-994X</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animal Diseases (virology)</term><term>Animals</term><term>Betacoronavirus (classification)</term><term>Betacoronavirus (genetics)</term><term>Betacoronavirus (physiology)</term><term>Chiroptera (virology)</term><term>Coronavirus Infections (veterinary)</term><term>Evolution, Molecular</term><term>Genome, Viral</term><term>Host Specificity</term><term>Humans</term><term>Italy</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Chiroptera (virologie)</term><term>Génome viral</term><term>Humains</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Italie</term><term>Maladies de l'animal (virologie)</term><term>Phylogénie</term><term>Réaction de polymérisation en chaîne</term><term>Spécificité d'hôte</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Italy</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Maladies de l'animal</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Animal Diseases</term><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Evolution, Molecular</term><term>Genome, Viral</term><term>Host Specificity</term><term>Humans</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Génome viral</term><term>Humains</term><term>Italie</term><term>Phylogénie</term><term>Réaction de polymérisation en chaîne</term><term>Spécificité d'hôte</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Italie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">Bats may be natural reservoirs for a large variety of emerging viruses, including mammalian coronaviruses (CoV). The recent emergence of severe acute respiratory syndrome-associated coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) in humans, with evidence that these viruses may have their ancestry in bats, highlights the importance of virus surveillance in bat populations. Here, we report the identification and molecular characterization of a bat β-Coronavirus, detected during a viral survey carried out on different bat species in the island of Sardinia (Italy). Cutaneous, oral swabs, and faecal samples were collected from 46 bats, belonging to 15 different species, and tested for viral presence. Coronavirus RNA was detected in faecal samples from three different species: the greater horseshoe bat (<italic>Rhinolophus ferrumequinum</italic>), the brown long-eared bat (<italic>Plecotus auritus</italic>), and the European free-tailed bat (<italic>Tadarida teniotis</italic>). Phylogenetic analyses based on RNA-dependent RNA polymerase (RdRp) sequences assigned the detected CoV to clade 2b within betacoronaviruses, clustering with SARS-like bat CoVs previously reported. These findings point to the need for continued surveillance of bat CoV circulating in Sardinian bats, and extend the current knowledge on CoV ecology with novel sequences detected in bat species not previously described as β-Coronavirus hosts.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Burgin, Cj" uniqKey="Burgin C">CJ Burgin</name></author><author><name sortKey="Colella, Jp" uniqKey="Colella J">JP Colella</name></author><author><name sortKey="Kahn, Pl" uniqKey="Kahn P">PL Kahn</name></author><author><name sortKey="Upham, Ns" uniqKey="Upham N">NS Upham</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garcia Perez, R" uniqKey="Garcia Perez R">R García-Pérez</name></author><author><name sortKey="Iba Ez, C" uniqKey="Iba Ez C">C Ibáñez</name></author><author><name sortKey="Godinez, Jm" uniqKey="Godinez J">JM Godínez</name></author><author><name sortKey="Arechiga, N" uniqKey="Arechiga N">N 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Sy" uniqKey="Zhang S">SY Zhang</name></author><author><name sortKey="Wang, Lf" uniqKey="Wang L">LF Wang</name></author><author><name sortKey="Daszak, P" uniqKey="Daszak P">P Daszak</name></author><author><name sortKey="Shi, Zl" uniqKey="Shi Z">ZL Shi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rihtaric, D" uniqKey="Rihtaric D">D Rihtaric</name></author><author><name sortKey="Hostnik, P" uniqKey="Hostnik P">P Hostnik</name></author><author><name sortKey="Steyer, A" uniqKey="Steyer A">A Steyer</name></author><author><name sortKey="Grom, J" uniqKey="Grom J">J Grom</name></author><author><name sortKey="Toplak, I" uniqKey="Toplak I">I Toplak</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Mucedda, M" uniqKey="Mucedda M">M Mucedda</name></author><author><name sortKey="Kiefer, A" uniqKey="Kiefer A">A Kiefer</name></author><author><name sortKey="Pidinchedda, E" uniqKey="Pidinchedda E">E Pidinchedda</name></author><author><name sortKey="Veith, M" uniqKey="Veith M">M Veith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Biollaz, F" uniqKey="Biollaz F">F Biollaz</name></author><author><name sortKey="Bruyndonckx, N" uniqKey="Bruyndonckx N">N Bruyndonckx</name></author><author><name sortKey="Beuneux, G" uniqKey="Beuneux G">G Beuneux</name></author><author><name sortKey="Mucedda, M" uniqKey="Mucedda M">M Mucedda</name></author><author><name sortKey="Goudet, J" uniqKey="Goudet J">J Goudet</name></author><author><name sortKey="Christe, P" uniqKey="Christe P">P Christe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Li, Ks" uniqKey="Li K">KS Li</name></author><author><name sortKey="Huang, Y" uniqKey="Huang Y">Y Huang</name></author><author><name sortKey="Tsoi, Hw" uniqKey="Tsoi H">HW Tsoi</name></author><author><name sortKey="Wong, Bh" uniqKey="Wong B">BH Wong</name></author><author><name sortKey="Wong, Ss" uniqKey="Wong S">SS Wong</name></author><author><name sortKey="Leung, Sy" uniqKey="Leung S">SY Leung</name></author><author><name sortKey="Chan, Kh" uniqKey="Chan K">KH Chan</name></author><author><name sortKey="Yuen, Ky" uniqKey="Yuen K">KY Yuen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Corman, Vm" uniqKey="Corman V">VM Corman</name></author><author><name sortKey="Baldwin, Hj" uniqKey="Baldwin H">HJ Baldwin</name></author><author><name sortKey="Tateno, Af" uniqKey="Tateno A">AF Tateno</name></author><author><name sortKey="Zerbinati, Rm" uniqKey="Zerbinati R">RM Zerbinati</name></author><author><name sortKey="Annan, A" uniqKey="Annan A">A Annan</name></author><author><name sortKey="Owusu, M" uniqKey="Owusu M">M Owusu</name></author><author><name sortKey="Nkrumah, Ee" uniqKey="Nkrumah E">EE Nkrumah</name></author><author><name sortKey="Maganga, Gd" uniqKey="Maganga G">GD Maganga</name></author><author><name sortKey="Oppong, S" uniqKey="Oppong S">S Oppong</name></author><author><name sortKey="Adu Sarkodie, Y" uniqKey="Adu Sarkodie Y">Y Adu-Sarkodie</name></author><author><name sortKey="Vallo, P" uniqKey="Vallo P">P Vallo</name></author><author><name sortKey="Ferreira Da Silva Filho, Lvr" uniqKey="Ferreira Da Silva Filho L">LVR Ferreira da Silva Filho</name></author><author><name sortKey="Leroy, Em" uniqKey="Leroy E">EM Leroy</name></author><author><name sortKey="Thiel, V" uniqKey="Thiel V">V Thiel</name></author><author><name sortKey="Van Der Hoek, L" uniqKey="Van Der Hoek L">L van der Hoek</name></author><author><name sortKey="Poon, Llm" uniqKey="Poon L">LLM Poon</name></author><author><name sortKey="Tschapka, M" uniqKey="Tschapka M">M Tschapka</name></author><author><name sortKey="Drosten, C" uniqKey="Drosten C">C Drosten</name></author><author><name sortKey="Drexler, Jf" uniqKey="Drexler J">JF Drexler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hu, B" uniqKey="Hu B">B Hu</name></author><author><name sortKey="Ge, X" uniqKey="Ge X">X Ge</name></author><author><name sortKey="Wang, Lf" uniqKey="Wang L">LF Wang</name></author><author><name sortKey="Shi, Z" uniqKey="Shi Z">Z Shi</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="L Pez Baucells, A" uniqKey="L Pez Baucells A">A Lòpez-Baucells</name></author><author><name sortKey="Rocha, R" uniqKey="Rocha R">R Rocha</name></author><author><name sortKey="Fernandez Llamazares, A" uniqKey="Fernandez Llamazares A">A Fernàndez-Llamazares</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Italie</li></country></list><tree><country name="Italie"><noRegion><name sortKey="Lecis, Roberta" sort="Lecis, Roberta" uniqKey="Lecis R" first="Roberta" last="Lecis">Roberta Lecis</name></noRegion><name sortKey="Alberti, Alberto" sort="Alberti, Alberto" uniqKey="Alberti A" first="Alberto" last="Alberti">Alberto Alberti</name><name sortKey="Alberti, Alberto" sort="Alberti, Alberto" uniqKey="Alberti A" first="Alberto" last="Alberti">Alberto Alberti</name><name sortKey="Lecis, Roberta" sort="Lecis, Roberta" uniqKey="Lecis R" first="Roberta" last="Lecis">Roberta Lecis</name><name sortKey="Mucedda, Mauro" sort="Mucedda, Mauro" uniqKey="Mucedda M" first="Mauro" last="Mucedda">Mauro Mucedda</name><name sortKey="Pidinchedda, Ermanno" sort="Pidinchedda, Ermanno" uniqKey="Pidinchedda E" first="Ermanno" last="Pidinchedda">Ermanno Pidinchedda</name><name sortKey="Pittau, Marco" sort="Pittau, Marco" uniqKey="Pittau M" first="Marco" last="Pittau">Marco Pittau</name><name sortKey="Pittau, Marco" sort="Pittau, Marco" uniqKey="Pittau M" first="Marco" last="Pittau">Marco Pittau</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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